USGS Publications on San Francisco Bay

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Aguado, E., Cayan, D.R, Reece, B., and Riddle, L., 1993, Patterns of orographic uplift in the Sierra Nevada and their relationship to upper-level atmospheric circulation, in Redmond, K.T., and Tharp, V.L., eds., Proceedings of the Ninth Annual Pacific Climate (PACLIM) Workshop: PACLIM, Asilomar, Calif., April 21-24, 1992, p. 153-164.

Alfaro, E.J., Gershunov, A., and Cayan, D., 2006, Prediction of summer maximum and minimum temperature over the central and western United States: The role of soil moisture and sea surface temperature. J. Climate, 19(8), 1407-1421.

Allison, D., Hampton, M., and Jaffe, B., 2003, Preliminary analysis of cores from north San Francisco Bay, California. U.S. Geological Survey Open-File Report 03-111 [URL http://geopubs.wr.usgs.gov/open-file/of03-111/].

Alpine, A.E., 1983, Use of in-vivo fluorescence to size fractionate phytoplankton biomass: San Francisco, San Francisco State University, Masters thesis, 43 p.

Alpine, A.E., and Cloern, J.E., 1985, Differences in-vivo fluorescence yield between three phytoplankton size classes: Journal of Plankton Research, v. 7, p. 381-390.

Alpine, A.E., and Cloern, J.E., 1988, Phytoplankton growth rates in a light-limited environment, San Francisco Bay: Marine Ecology Progress Series, v. 44, p. 167-173.

Alpine, A.E., and Cloern, J.E., 1992, Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary: Limnology and Oceanography, v. 37, p. 946-955.

Alpine, A.E., Cloern, J.E., and Cole, B.E., 1981, Plankton studies in San Francisco Bay, 1, chlorophyll distributions and hydrographic properties of the San Francisco Bay estuary, July 1977-December 1979: U.S. Geological Survey Open-File Report 81-213, 150 p.

Alpine, A.E., Wienke, S.M., Cloern, J.E., and Cole, B.E., 1988, Plankton studies in San Francisco Bay, IX, chlorophyll distributions and hydrographic properties of south San Francisco Bay, 1984-1986: U.S. Geological Survey Open-File Report 88-319, 86 p.

Alpine, A.E., Wienke, S.M., Cloern, J.E., Cole, B.E., and Wong, R.L.J., 1985, Plankton studies in San Francisco Bay, VIII, chlorophyll distributions and hydrographic properties of south San Francisco Bay, 1983: U.S. Geological Survey Open-File Report 85-196, 58 p.

Ambler, J.W., Cloern, J.E., and Hutchinson, A., 1985, Seasonal cycles of zooplankton from San Francisco Bay: Hydrobiologia, v. 129, p. 177-197.

Arnal, R.E., Quinterno, P.J., Conomos, T.J., and Gram, R., 1980, Trends in the distribution of Recent Foraminifera in San Francisco Bay: Cushman Foundation Special Publication, v. 19, p. 17-39.

Athearn, N.D., Goodenough, K., Takekawa, J.Y., Miles, A.K., Saiki, M.K., Spring, S., Mejia, F., Shellenbarger, G.G., and Schoellhamer, D.H., 2005,  Napa-Sonoma marshes pond 3, hydrologic and biotic changes in a salt pond following breaching: Proceedings of the 7th biennial State-of-the-Estuary Conference, Oakland, California, October 4-6, 2005, p. 59.

Athearn, N.D., and Takekawa, J.Y., 2006, Avian Data Summaries and Analyses from Short-term Data Needs, 2003-2005,  Unpublished Report, U.S. Geological Survey, Vallejo, CA. 183 p.

Atwater, B.F., 1979, Ancient processes at the site of southern San Francisco Bay, movement of the crust and changes in sea level, in Conomos, T.J., ed., San Francisco Bay - The Urbanized Estuary: American Association for the Advancement of Science, Pacific Division, San Francisco, p. 31-45.

Atwater, B.F., and Belknap, D.F., 1980, Tidal-wetland deposits of the Sacramento - San Joaquin Delta, California, in Field, M.E., Buoma, A.H., Coburn, I.P., Douglas, R.G., and Ingle, J.C., Jr., eds., Quaternary Depositional Environments of the Pacific Coast: Society of Economic Paleontologists and Mineralogists, Pacific Coast Paleogeography Symposium, v. 4, p. 89-103.

Atwater, B.F., Conrad, S.G., Dowden, J.N., Hedel, C.W., MacDonald, R.L., and Savage, W., 1979, History, landforms, and vegetation of the estuary's tidal marshes, in Conomos, T.J., ed., San Francisco Bay - The Urbanized Estuary: American Association for the Advancement of Science, Pacific Division, San Francisco, p. 347-386.

Atwater, B.F., and Hedel, C.W., 1976, Distribution of seed plants with respect to tide levels and water salinity in the natural tidal marshes of the northern San Francisco Bay estuary, California: U.S. Geological Survey Open-File Report 76-389, 41 p.

Atwater, B.F., Hedel, C.W., and Helley, E.J., 1977, Late Quaternary depositional history, Holocene sea-level changes, and vertical crustal movement, southern San Francisco Bay: U.S. Geological Survey Professional Paper 1014, 15 p.

Bachman, R.W., Cloern, J.E., Hecky, R.E., and Schindler, D.W. (editors), 2006, Eutrophication of Freshwater and Marine Ecosystems, Limnology and Oceanography, Special Issue 51: 351-800.

Baines, S.B., Fisher, N.S., and Stewart, A.R., 2002, Assimilation and retention of selenium and other trace elements from crustacean food by juvenile striped bass (Morone saxatilis), Limnology and Oceanography, v. 47, no. 3, p. 646-655.

Bales, R., Molotch, N., Painter, T., Dettinger, M., Rice, R., and Dozier, J., 2006, Mountain hydrology of the western US: Water Resources Research, W08432, doi:10.1029/2005WR004387, 13 p.

Barad, M.F., Schladow, S.G., Warner, J.C., and Schoellhamer, D.H., 2001, CISNet San Pablo Bay Network of Environmental Stress Indicators: The CISNet Hydrodynamic Database: Proceedings of the 5th biennial State of the Estuary Conference, San Francisco, Calif., October 9-11, 2001, p. 112.

Baylosis, J.I., Cole, B.E., and Cloern, J.E., 1998, Studies of the San Francisco Bay, California, estuarine ecosystem. pilot regional monitoring program results, 1997: U.S. Geological Survey Open-File Report 98-168, 209 p.

Baylosis, J.I., Edmunds, J.L, Cole, B.E., and Cloern, J.E., 1997, Studies of the San Francisco Bay, California estuarine ecosystem: pilot regional monitoring results, 1996: U.S. Geological Survey Open-File Report 97-598, 203 p.

Bearman, J., Foxgrover, A., Friedrichs, C., and Jaffe, B., 2006, Factors controlling tidal flat morphology in South San Francisco Bay, [abs.]: South Bay Science Symposium, "South Bay Salt Ponds, Bay and Watershed Research," San Jose, Calif., June 6, 2006.

Bearman, J., Foxgrover, A., Friedrichs, C., and Jaffe, B., 2006, Factors controlling tidal flat morphology in South San Francisco Bay, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract H33B-1498

Bergamaschi, B.A., Baston, D.S., Crepeau, K.L., and Kuivila, K.M., 1998, Determination of pesticides associated with suspended sediments in the San Joaquin River, CA using gas chromatography-ion trap mass spectrometry: Toxicological and Environmental Chemistry, v. 69, p. 305-319.

Bergamaschi, B.A., Downing, B.D., Wheeler, G.A., Schoellhamer, D.H., Ganju, N., Fram, M.S., Erickson, D.E., Kendall, C., Bemis, B.E., Stepanauskas, R., Hollibaugh, J.T., and Fujii, R., 2003, Quantifying the contributions of tidal wetlands to dissolved organic material in the San Francisco Estuary, California, USA: Proceedings of the 17th Biennial Conference of the Estuarine Research Federation, Seattle, Washington, September 14-18, 2003, p. 13.

Bergamaschi, B.A., Crepeau, K.L., and Kuivila, K.M., 1997, Pesticides associated with suspended sediments in the San Francisco Bay estuary, California: U.S. Geological Survey Open-File Report 97-24.

Bergamaschi, B.A., Kuivila, K.M., and Fram, M.S., 1999, Pesticides associated with suspended sediments in the San Francisco Bay during the first flush, December, 1995, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program - Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999, v. 2 - Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 23-34.

Bergamaschi, B.A., Kuivila, K.M., and Fram, M.S., 2001, Pesticides associated with suspended sediments entering San Francisco Estuary following the first major storm of water year 1996, Estuaries, v. 24(3), p. 368-380.

Bergfeld, L.G., and Schoellhamer, D.H., 2003, Comparison of salinity and temperature at continuous monitoring stations and nearby monthly measurement sites in San Francisco Bay: IEP Newsletter, v. 16, no. 3, p. 5-11.

Bradford, W.L., and Luoma, S.N., 1980, Some perspectives on heavy metal concentrations in shellfish and sediment in San Francisco Bay, California, in Baker, R.A., ed., Contaminants and Sediments, v. 2, Ann Arbor Science Publishers, Inc., p. 501-532.

Brennan, M.L., Schoellhamer, D.H., Burau, J.R., and Monismith, S.G., 2002, Tidal asymmetry and variability of bed shear stress and sediment bed flux at a site in San Francisco Bay, USA, in Winterwerp, J.C. and Kranenburg, C., ed., Fine Sediment Dynamics in the Marine Environment: Elsevier Science B.V., p. 93-108.

Brown, C.L., and Luoma, S.N., 1995, Energy-related selenium and vanadium contamination in San Francisco Bay, California - effects on biological resources, in Tenth McKelvey Forum on Energy and the Environment - Application of Geosciences to Decision Making: U.S. Geological Survey Circular 1108, p. 91-93.

Brown, C.L., and Luoma, S.N., 1998, Metal trends and effects in Potamocorbula amurensis in north San Francisco Bay: Interagency Ecological Program Newsletter, v. 11, no. 2, p. 33-35.

Brown, C.L., and Luoma, S.N., 1999, Metal trends and effects in Potamocorbula amurensis in north San Francisco Bay, in Morganwalp, D.W., and Buxton, H.T., eds.  U.S. Geological Survey Toxic Substances Hydrology Program—Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999, v. 2—Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 17-23.

Brown, C.L., Parchaso, F., Thompson, J.K., and Luoma, S.N., 2003,  Assessing toxicant effects in a complex estuary: a case study of effects of silver on reproduction in the bivalve Potamocorbula amurensis in San Francisco Bay : Human and Ecological Risk Assessment, v. 9, no. 1, p. 95-119.

Buchanan, P.A., 1999, Specific conductance, water temperature, and water level data, San Francisco Bay, California, water year 1998: Interagency Ecological Program Newsletter, v. 12, no. 4, p. 46-51.

Buchanan, P.A., 2000, Specific conductance, water temperature, and water level data from San Francisco Bay, California, in water year 1999: Interagency Ecological Program Newsletter, v. 13, no. 3, p. 17-20.

Buchanan, P.A., 2002, Water level, specific conductance, and water temperature data, San Francisco Bay, California, for Water Year 2000: Interagency Ecological Program Newsletter, v. 15, no. 1, p. 22-26.

Buchanan, P.A., 2003, Specific-conductance, water-temperature, and water-level data, San Francisco Bay, California, for water years 2001-2002: Interagency Ecological Program Newsletter, v. 16, no. 4, p. 25-30.

Buchanan, P.A., 2004, Specific conductance and water temperature data for San Francisco Bay, California, for Water Year 2003: Interagency Ecological Program Newsletter, v. 17, no. 3, p. 11-14.

Buchanan, P.A., 2005, Specific conductance and water temperature data for San Francisco Bay, California, for Water Year 2004: Interagency Ecological Program Newsletter, v. 18, no. 3, p. 2-6.

Buchanan, P.A., and Ganju, N.K., 2002, Summary of suspended-sediment concentration data, San Francisco Bay, California, water year 2000: USGS Open file report 01-100, 56 p.

Buchanan, P.A., and Ganju, N.K., 2003, Summary of suspended-sediment concentration data, San Francisco Bay, California, water year 2001: U.S. Geological Survey Open-File Report 03-312.

Buchanan, P.A., and Ganju, N.K., 2004. Summary of suspended-sediment concentration data, San Francisco Bay, California, Water Year 2002: U.S. Geological Survey Open File Report 2004-1219.

Buchanan, P.A., and Ganju, N.K., 2005, Summary of suspended-sediment concentration data in San Francisco Bay, California, water year 2003: U.S. Geological Survey Data Series 113.

Buchanan, P.A., and Lionberger, M.A., 2006, Summary of suspended-sediment concentration data in San Francisco Bay, California, water year 2004: U.S. Geological Survey Data Series 226, 49 p.

Buchanan, P.A., and Ruhl, C.A., 2000, Summary of suspended-solids concentration data, San Francisco Bay, California, water year 1998: U.S. Geological Survey Open File Report 00-88, 41 p.

Buchanan, P.A., and Ruhl, C.A., 2001, Summary of suspended-sediment concentration data, San Francisco Bay, California, water year 1999: U.S. Geological Survey Open File Report 01-100, 56 p.

Buchanan, P.A., and Schoellhamer, D.H., 1995, Summary of suspended-solids concentration data, central and south San Francisco Bay, California, water years 1992 and 1993: U.S. Geological Survey Open-File Report 94-543, 15 p.

Buchanan, P.A., and Schoellhamer, D.H., 1996,  Summary of suspended-solids concentration data, San Francisco Bay, California, water year 1995: U.S. Geological Survey Open-File Report 96-591, 40 p.

Buchanan, P.A., and Schoellhamer, D.H., 1998, Summary of suspended-solids concentration data in San Francisco Bay, California, water year 1996: U.S. Geological Survey Open-File Report 98-175, 59 p.

Buchanan, P.A., and Schoellhamer, D.H., 1999, Summary of suspended-solids concentration data in San Francisco Bay, California, water year 1997: U.S. Geological Survey Open-File Report 99-189, 52 p.

Buchanan, P.A., and Ganju, N.K., 2002, Summary of suspended-sediment concentration data, San Francisco Bay, California, water year 2000: U.S. Geological Survey Open File Report 02-146.

Buchanan, P.A., Schoellhamer, D.H., and Sheipline, R.C., 1996,  Summary of suspended-solids concentration data, San Francisco Bay, California, water year 1994: U.S. Geological Survey Open-File Report 95-776, 48 p.

Burau, J.R., and Cheng, R.T., 1988, Predicting tidal currents in San Francisco Bay using a spectral model, in Abt, S.R., and Gessler, J., eds., Proceedings American Society of Civil Engineers National Hydraulic Engineering Conference: Colorado Springs, Colo., p. 634-639.

Burau, J.R., and Cheng, R.T., 1989, A general method for generating bathymetric data for hydrodynamic computer models: U.S. Geological Survey Open-File Report 89-28, 41 p.

Burau, J.R., and Cheng, R.T., 1989, A vertically averaged spectral model for tidal circulation in estuaries, Part 1, model formulation: U.S. Geological Survey Open-File Report 88-4126, 29 p.

Burau, J.R., Gartner, J.W., and Stacey, M., 1998, Results from the hydrodynamic element of the 1994 entrapment zone study in Suisun Bay: Interagency Ecological Program for the San Francisco Bay/Delta Estuary Technical Report 56, p. 13-55.

Burau, J.R., Monismith, S.G., Stacey, M.T., Oltmann, R.N., Lacy, J.R., Schoellhamer, D.H., 1999, Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay: Interagency Ecological Program Newsletter, v. 11, no. 2, p. 45-55.

Burau, J.R., Stacey, M., and Gartner, J.W., 1995, Preliminary results from the hydrodynamic element of the 1994 entrapment zone study: Interagency Ecological Program for the Sacramento - San Joaquin Estuary Newsletter, Autumn 1995, p. 12-17.

Cacchione, D.A., Gardner, J.V., Chavez, P.F., Chin, J.L., Dartnell, P., and Velasco, M., 1997, The seafloor of central San Francisco Bay, California [abs]: American Geophysical Union, Fall Meeting, San Francisco, December 8-12, 1997.

Caffrey, J.M., Cole, B.E., Cloern, J.E., Rudek, J.R., Tyler, A.C., and Jassby, A.D., 1994, Studies of the San Francisco Bay, California, estuarine ecosystem: pilot regional monitoring program results, 1993: U.S. Geological Survey Open-File Report 94-82, 411 p.

Caffrey, J.M., Grenz, C., and Cloern, J.E., 1998,  Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: implications for net ecosystem metabolism: Marine Ecology Progress Series, v. 172, p. 1-12.

Caffrey, J., Hammond, D., Kuwabara, J., Miller, L., and Twilley, R., 1996, Benthic processes in San Francisco Bay: the role of organic inputs and bioturbation, in Hollibaugh, J.T., ed., San Francisco Bay  - The Ecosystem: American Association for the Advancement of Science, Pacific Division, San Francisco, p. 425-442.

Cain, D.J., and Luoma, S.N., 1985, Copper and silver accumulation in transplanted and resident clams (Macoma balthica) in south San Francisco Bay: Marine Environmental Research, v. 15, p. 115-135.

Cain, D.J., and Luoma, S.N., 1986, Effect of seasonally changing tissue weight on trace metal concentrations in the bivalve Macoma balthica in San Francisco Bay: Marine Ecology Progress Series, v. 28, p. 209-217.

Cain, D.J., and Luoma, S.N., 1990, Influence of seasonal growth, age, and environmental exposure on Cu and Ag in a bivalve indicator, Macoma balthica, in San Francisco Bay: Marine Ecology Progress Series, v. 60, p. 45-55.

Cain, D.J., Thompson, J.K., and Luoma, S.N., 1987, The effect of differential growth on spatial comparisons of copper content of a bivalve indicator, in Lindberg, S.E., and Hutchinson, T.C., eds., Heavy Metals in the Environment: Edinburgh CEP Consultants Ltd., p. 455-457.

Cain, D. J., Parchaso, F., Thompson, J.K., Luoma, S.N., Lorenzi, A.H., Moon, E., Shouse, M. K., Hornberger, M.I., and J.L. Dyke, 2006, Near-Field Receiving Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2005, U.S. Geological Survey Open File Report 2006-1152, Menlo Park, California, 128p.

Canuel, E.A., and Cloern, J.E., 1996, Regional differences in the origins of organic matter in the San Francisco Bay ecosystem: evidence from lipid biomarkers, in Hollibaugh, J.T., ed., San Francisco Bay: The Ecosystem: American Association for the Advancement of Science, Pacific Division, San Francisco, p. 305-324.

Canuel, E.A., Cloern, J.E., Ringelberg, D.B., Guckert, J.B., and Rau, G.H., 1995, Molecular and isotopic tracers used to examine sources of organic matter and its incorporation into the food webs of San Francisco Bay: Limnology and Oceanography, v. 40, p. 67-81.

Cappiella, K., Malzone, C., Smith, R., and Jaffe, B., 1999, Sedimentation and bathymetry changes in Suisun Bay, 1867-1990: U.S. Geological Survey Open-File Report 99-563. [poster]

Carlson, P.R., Alpha, T.R., and McCulloch, D.S., 1970, The floor of central San Francisco Bay: Mineral Information Service, California Division of Mines and Geology, v. 23, no. 5, p. 97-107.

Carlson, P.R., and McCulloch, D.S., 1974, Aerial observations of suspended sediment plumes in San Francisco Bay and the adjacent Pacific Ocean: U.S. Geological Survey, Journal of Research, v. 2, p. 519-526.

Carlton, J.T., Thompson, J.K., Schemel, L.E., and Nichols, F.H., 1990, The remarkable invasion of San Francisco Bay (California, USA) by the Asian clam Potamocorbula amurensis, I, Introduction and dispersal: Marine Ecology Progress Series, v. 66, p. 81-94.

Casulli, V., Bertolazzi, E., and Cheng, R.T., 1993, TRIM_3D: a three-dimensional model for accurate simulation of shallow water flow, in National Conference on Hydraulic Engineering, 1993, Proceedings: American Society of Civil Engineers, San Francisco, Calif., July 1993, p. 1,988-1,993.

Casulli, V., and Cheng, R.T., 1992, A semi-implicit finite difference model for three-dimensional tidal circulation, in Spaulding M., and others, eds., Estuarine and Coastal Modeling: American Society of Civil Engineers, Tampa, Fla., p. 620-631.

Casulli, V., and Cheng, R.T., 1992, Semi-implicit finite difference methods for three-dimensional shallow water flow: International Journal for Numerical Methods in Fluids, v. 15, p. 629-648.

Casulli, V., and Cheng, R.T., 1994, Solutions of primitive equations for three-dimensional tidal circulation, in Third International Conference on Estuarine and Coastal Modeling, Proceedings: American Society of Civil Engineers, Chicago, Ill., September 1993, p. 396-406

Casulli, V., Cheng, R.T., and Bulgarelli, U., 1984, Eulerian - Lagrangian solution of convection dominated diffusion problems: Proceedings of 2nd Annual Conference on Numerical Methods for Non-Linear Problems, Barcelona, Spain, v. 2, p. 962-971

Catts, G.P., Khorram, S., Cloern, J.E., Knight, A.W., and DeGloria, S.D., 1985, Remote sensing of tidal chlorophyll - variations in estuaries: International Journal of Remote Sensing, v. 6, no. 11, p. 1,685-1,706.

Cayan, D.R., 1996, Climate variability and snowpack in the western United States: Journal of Climate, v. 9, p. 928-948.

Cayan, D.R., Bromirski, P., Hayhoe, K., Tyree, M., Dettinger, M., and Flick, R., 2006, Projecting future sea level: Report to California Energy Commission and California Environmental Protection Agency, 30 p.

Cayan, D.R., Dettinger, M.D., Caprio, J.M., Kammerdiener, S.A., and Peterson, D.H., 2001, Reply to Comments on “Changes in the Onset of Spring in the Western United States”; by D. Lilly: Bulletin American Meterological Society, v. 82, p. 2,265-2,266.

Cayan, D.R., Dettinger, M.D., Diaz, H.F., and Graham, N., 1997, Decadal variability of precipitation over western North America: American Meteorological Society, 8th Symposium on Global Change Studies, Long Beach, Calif., p. 34-35.

Cayan, D.R., Dettinger, M.D., Diaz, H.F., and Graham, N., 1998,  Decadal variability of precipitation over western North America: Journal of Climate, v. 11, p. 3,148-3,166.

Cayan, D., Dettinger, M., Stewart, I., and Knowles, N., 2005, Recent changes toward earlier springs---Early signs of climate warming in western North America: Watershed Management Council Networker, 13, Spring 2005, 3-7.

Cayan, D.R., Kammerdiener, S.A., Dettinger, M.D., Caprio, J.M., and Peterson, D.H., 2001,  Changes in the Onset of Spring in the Western United States: Bulletin of the American Meteorological Society, v. 82, no. 3, p. 399-415.

Cayan, D.R., Maurer, E., Dettinger, M., Tyree, M., Hayhoe, K., Bonfils, C., Duffy, P., and Santer, B., 2006, Climate scenarios for California: Report to California Energy Commission and California Environmental Protection Agency, 40 p.

Cayan, D.R., McClain, D.R., Nichols, W.D., and DiLeo-Stevens, J., 1991, The monthly climate time series data for the Pacific Ocean and western Americas: U.S. Geological Survey Open-File Report 91-92, 380 p.

Cayan, D.R., Miller, A., Barnett, T., Graham, N., Ritchie, J., and Oberhuber, J.F., 1995, Seasonal-interannual fluctuations in surface temperature over the Pacific: effects of monthly winds and heat fluxes, in Natural Climate Variability on Decade-to-Century Time Scales: Washington, D.C., National Academy Press, p. 133-148.

Cayan, D.R., and Peterson, D.H., 1989, The influence of north Pacific atmospheric circulation on streamflow in the west, in Peterson, D.H., ed., Climate Variability on the eastern Pacific and western North America: Geophysical Monograph 55, Geophysical Union, p. 375-397.

Cayan, D.R., and Peterson, D.H., 1993, Spring climate and salinity in the San Francisco Bay estuary: Water Resources Research, v. 29, no. 2, p. 293-303.

Cayan, D.R., Peterson, D.H., Riddle, L., Dettinger, M.D., and Smith, R.E., 1997, The spring runoff pulse from the Sierra Nevada: Interagency Ecological Program Newsletter, Summer 1997, p. 25-28.

Cayan, D.R., Peterson, D.H., Riddle, L., Dettinger, M.D., and Smith, R., 1999,  The spring runoff pulse from the Sierra Nevada: American Meteorological Society, 14th Conference on Hydrology, Dallas, Tex., January 1999, p. 77-79.

Cayan, D.R., Redmond, K.T., and Riddle, L.G., 1999, ENSO and hydrologic extremes in the western United States: Journal of Climate, v. 12, p. 2,881-2,893.

Cayan, D.R., and Riddle, L., 1992, Atmospheric circulation and precipitation in the Sierra Nevada, in Herrmann, R., ed., 28th Annual Conference and Symposium: American Water Resources Association, Reno, Nevada, p. 711-720.

Cayan, D.R., and Webb, R.H., 1992, El Nino/southern Oscillation and streamflow in the western United States, in Diaz, H.F., and Markgraf, V., eds., El Nino - Historical and Paleoclimatic Aspects of the Southern Oscillation: Cambridge, Cambridge University Press, p. 29-68.

Chadwick, D.B., Largier, J.L., and Cheng, R.T., 1996, The role of thermal stratification in tidal exchange at the mouth of San Diego Bay, in Aubrey, D.G., and Friedrichs, C.T., eds., Buoyancy Effects on Estuaries and Coastal Dynamics: American Geophysical Union Coastal and Estuarine Studies, v. 53, p. 155-174.

Chauvaud, L., Thompson, J.K., Cloern, J.E., and Thouzeau, G., 2003, Clams as CO₂ generators: the Potamocorbula amurensis example in San Francisco Bay: Limnology and Oceanography, v. 48, no. 6, p. 2,086-2,092.

Cheng, R.T., 1978, Comparison of a few recording current meters in San Francisco Bay, CA: Proceedings, Conference on Current Measurements, Delaware University, Newark, N.J., p. 293-301.

Cheng, R.T., 1980, Modeling of environmental hydrodynamics and field data requirements: Proceedings, 3rd International Conference on Finite Elements in Flow Problems, Banff, Canada, p. 43-53.

Cheng, R.T., 1982, Modeling of tidal and residual circulation in San Francisco Bay, California: Proceedings, Seminar on 2-D Flows, HEC Report, U.S. Army Corps of Engineers, Davis, Calif., July 1981, p. 172-185.

Cheng, R.T., 1983, Euler-Lagrangian computation for estuarine hydrodynamics, in Taylor, C., and others, eds., Proceedings, 3rd International Conference on Numerical Methods in Laminar and Turbulent Flows: Swansea, Wales Pineridge Press, p. 341-352.

Cheng, R.T., 1986, Modeling of estuarine hydrodynamics - a mixture of art and science: Proceedings, 3rd International Symposium on River Sedimentation, Jackson, Wyo., p. 1,468-1,475.

Cheng, R.T., 1988, Eulerian and Lagrangian modeling of estuarine hydrodynamics, in Kjerfve B., ed. Hydrodynamics of Estuaries, v. 1: Boca Raton, Fla., CRC Press Inc., p. 149-159.

Cheng, R.T., ed., 1990, Residual currents and long-term transport: Coastal and Estuarine Studies, v. 38: New York, Springer-Verlag, 544 p.

Cheng, Ralph T., 1995, Viewpoints and practices - numerical modeling of 3-D estuarine hydrodynamics: Advances in Hydro-Science And Engineering, v. II, Part B, p. 1,361-1,367.

Cheng, R.T., and Burau, J.R., 1988, System considerations in numerical modeling of estuarine problems, in Niki, H., and Kawahara, M., eds., Computational Methods in Flow Analysis: Proceedings, International Conference on Computational Method in Flow Analysis, Okayama, Japan, 1988, p. 1,025-1,032.

Cheng, R.T., Burau, J.R., and Gartner, J.W., 1991, Interfacing data analysis and numerical modeling for tidal hydrodynamic phenomena, in Parker, B.B., ed., Tidal Hydrodynamics: New York, John Wiley, p. 201-219.

Cheng, R.T., and Casulli, V., 1982, On Lagrangian currents with applications in south San Francisco Bay, California: Journal of Water Resources Research, v. 18, no. 6, p. 1,652-1,662.

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